Director - Automation Engineering

About Lilly We're a medicine company turning science into healing to make life better for people around the world. It all started nearly 150 years ago with a clear vision from founder Colonel Eli Lilly: "Take what you find here and make it better and better." Harnessing the power of biotechnology, chemistry and genetic medicine, our scientists are urgently advancing science to solve some of the world's most significant health challenges. General Information and Guidelines: When you engage with us on LinkedIn, you're agreeing to these Community Guidelines: https://e.lilly/guidelines. If you have questions about a Lilly medicine, contact The Lilly Answers Center at 1-800-Lilly-Rx (1-800-545-5979) Monday through Friday, excluding company holidays.

Lilly

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lilly.com

10,001+ employees

Pharmaceutical Manufacturing

Indianapolis, Indiana

Public Company

2.9M LinkedIn followers

Raised $6.5B

• Lead, mentor, and grow a team of automation experts, setting technical direction and developing talent across the group
• Partner with scientific users across RNA Therapeutics, building trust and driving adoption by delivering automation solutions that teams genuinely want to work with
• Work directly with scientists to understand their workflows, weigh scientific tradeoffs and priorities, and validate that automated processes meet scientific intent
• Develop and implement the RNA automation strategy, aligning platform investments with the scientific priorities of RNA Therapeutics
• Design and deliver automation systems spanning walk-up instruments and fully integrated end-to-end workflows
• Lead the deployment of custom work cells tailored to specific pipeline processes (e.g. NGS enablement) and throughput needs
• Deliver pipeline-facing automation across chemistry, biology, genomics, in vivo pharmacology, and in vitro pharmacology
• Strengthen data reproducibility across automated processes, establishing the standards, controls, and validation practices that make results consistent and reliable
• Adopt and scale LLM-based tools to accelerate automation enablement and programming, reducing the time from concept to deployed method and lowering the barrier to onboarding new instruments and workflows
• Partner with AI/ML colleagues to facilitate the implementation of agentic tools and workflows across automation platforms
• Build highly integrated automation platforms that enable the generation of massively scaled datasets purpose-designed for AI/ML modeling efforts
• Lead an automation team that spans multiple sites, coordinating delivery and standards across geographies
• Advance capabilities across cell culture automation, genomics automation, agentic laboratory systems, and tissue sample preparation workflows
• Lead lab orchestration efforts and integrations with core scientific software, including Benchling
• Represent the team's work to internal and external partners and contribute to a culture of reliable, user-centered automation

• Bachelor's degree in engineering, computer science, biological sciences, or related engineering field, with 10+ years of relevant experience in laboratory automation, including experience leading teams OR
• PhD degree in engineering, computer science, biological sciences, or related engineering field with 5+ years experience in laboratory automation, including experience leading teams
• Demonstrated experience leading and developing automation engineering teams.
• Exceptional interpersonal skills, with a proven ability to build trust and drive adoption among scientific users, including those with limited prior automation experience.
• Experience working directly with scientists to validate scientific workflows and weigh scientific tradeoffs and priorities.
• Deep familiarity with cell culture automation and genomics automation.
• Experience delivering pipeline-facing automation across chemistry, biology, genomics, in vivo pharmacology, and in vitro pharmacology.
• Experience designing, building, and validating custom automation work cells.
• Hands-on expertise with the Hamilton automation ecosystem, and familiarity with other major automation vendors such as Beckman, Dynamic Devices, and Agilent.
• Experience with schedulers and end-to-end lab orchestration.
• Experience integrating automation with ELN/LIMS, such as Benchling.
• Experience supporting in vivo sample preparation workflows.
• Experience using LLM-based coding tools or agentic assistants to accelerate method development, scripting, or systems integration.
• Experience designing automation platforms that generate large-scale, structured datasets suitable for AI/ML applications.
• Experience with automated sample management systems.
• Advanced degree in a relevant engineering or scientific field is a plus.
• Ability to travel up to 20% across sites.
• Our employee resource groups (ERGs) offer strong support networks for their members and are open to all employees. Our current groups include: Africa, Middle East, Central Asia (AMECA), Black Employees at Lilly (BE@Lilly), Chinese Culture Network (CCN), EnAble, Evolve, Lilly Indian Network (LIN), Organization of Latinx at Lilly (OLA), Pride (LGBTQ+ Allies), Veterans Leadership Network (VLN) and Women’s Initiative for Leading at Lilly (WILL).
• Actual compensation will depend on a candidate’s education, experience, skills, and geographic location. The anticipated wage for this position is
• $ - $
• Full-time equivalent employees also will be eligible for a company bonus (depending, in part, on company and individual performance). In addition, Lilly offers a comprehensive benefit program to eligible employees, including eligibility to participate in a company-sponsored 401(k); pension; vacation benefits; eligibility for medical, dental, vision and prescription drug benefits; flexible benefits (e.g., healthcare and/or dependent day care flexible spending accounts); life insurance and death benefits; certain time off and leave of absence benefits; and well-being benefits (e.g., employee assistance program, fitness benefits, and employee clubs and activities).Lilly reserves the right to amend, modify, or terminate its compensation and benefit programs in its sole discretion and Lilly’s compensation practices and guidelines will apply regarding the details of any promotion or transfer of Lilly employees.

• 401(k)
• Pension
• Vacation benefits
• Medical insurance
• Dental insurance
• Vision insurance
• Prescription drug benefits
• Flexible spending accounts
• Life insurance
• Death benefits
• Employee assistance program
• Fitness benefits
• Employee clubs and activities
• Company bonus